Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend itself for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.
Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend itself for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.
Victor Albert is Head of the Botanical Garden and Associate Professor at The Natural History Museums and Botanical Garden, University of Oslo, Norway. Dr. Albert has published and lectured broadly in the fields of phylogenetic theory and methodology, plant systematics and evolution, plant molecular developmental biology, and evolutionary genomics.
Inhaltsangabe
* Preface * 1: Victor A. Albert: Parsimony and phylogenetics in the genomic age * The philosophy of parsimony analysis, including comparison with model-based approaches * 2: Arnold G. Kluge: What is the rationale for 'Ockham's Razor' (a.k.a. parsimony) in phylogenetic inference? * 3: Elliott Sober: Parsimony and its presuppositions * Parsimony, character analysis, and optimization of sequence characters * 4: Brent D. Mishler: The logic of the data matrix in phylogenetic analysis * 5: Ward C. Wheeler: Alignment, dynamic homology, and optimization * 6: Jan De Laet: Parsimony and the problem of inapplicables in sequence data * Computational limits of parsimony analysis: from historical aspects to competition with fast model-based approaches * 7: Jerrold I. Davis, Kevin C. Nixon, Damon P. Little: The limits of conventional cladistic analysis * 8: Pablo A. Goloboff, Diego Pol: Parsimony and Bayesian phylogenetics * Mathematical attributes of parsimony * 9: Mike Steel and David Penny: Maximum parsimony and the phylogenetic information in multi-state characters * Parsimony and genomics * 10: David A. Liberles: Using phylogeny to understand genomic evolution * 11: Igor Rogozin et al.: Dollo parsimony and reconstruction of genome evolution * References * Index
* Preface * 1: Victor A. Albert: Parsimony and phylogenetics in the genomic age * The philosophy of parsimony analysis, including comparison with model-based approaches * 2: Arnold G. Kluge: What is the rationale for 'Ockham's Razor' (a.k.a. parsimony) in phylogenetic inference? * 3: Elliott Sober: Parsimony and its presuppositions * Parsimony, character analysis, and optimization of sequence characters * 4: Brent D. Mishler: The logic of the data matrix in phylogenetic analysis * 5: Ward C. Wheeler: Alignment, dynamic homology, and optimization * 6: Jan De Laet: Parsimony and the problem of inapplicables in sequence data * Computational limits of parsimony analysis: from historical aspects to competition with fast model-based approaches * 7: Jerrold I. Davis, Kevin C. Nixon, Damon P. Little: The limits of conventional cladistic analysis * 8: Pablo A. Goloboff, Diego Pol: Parsimony and Bayesian phylogenetics * Mathematical attributes of parsimony * 9: Mike Steel and David Penny: Maximum parsimony and the phylogenetic information in multi-state characters * Parsimony and genomics * 10: David A. Liberles: Using phylogeny to understand genomic evolution * 11: Igor Rogozin et al.: Dollo parsimony and reconstruction of genome evolution * References * Index
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