Data Analysis for Mass Spectrometry-Based Proteomics
Novel Data Analysis Methods and Algorithms for Identification of Peptides and Proteins by Use of Tandem Mass Spectrometry
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Tandem mass spectrometry is one of the most importanttools for protein analysis. This work is focused onthe development of new methods and algorithms fortandem mass spectrometry data analysis. A databasesearch engine, MassMatrix, has also been developedthat incorporates these methods and algorithms. Theprogram is publicly available both on the web serverat www.massmatrix.net and as a deliverable softwarepackage for personal computers. Three differentscoring algorithms have been developed to identifyand characterize proteins and peptides by use oftandem mass spectrometry data. In addition, a da...
Tandem mass spectrometry is one of the most important
tools for protein analysis. This work is focused on
the development of new methods and algorithms for
tandem mass spectrometry data analysis. A database
search engine, MassMatrix, has also been developed
that incorporates these methods and algorithms. The
program is publicly available both on the web server
at www.massmatrix.net and as a deliverable software
package for personal computers. Three different
scoring algorithms have been developed to identify
and characterize proteins and peptides by use of
tandem mass spectrometry data. In addition, a data
analysis method for identification of disulfide bonds
in proteins and peptides by tandem mass spectrometry
data has been developed and incorporated in
MassMatrix. By this new approach, proteins and
peptides with disulfide bonds can be directly
identified in tandem mass spectrometry with high
confidence without any chemical reduction and/or
other derivatization.
tools for protein analysis. This work is focused on
the development of new methods and algorithms for
tandem mass spectrometry data analysis. A database
search engine, MassMatrix, has also been developed
that incorporates these methods and algorithms. The
program is publicly available both on the web server
at www.massmatrix.net and as a deliverable software
package for personal computers. Three different
scoring algorithms have been developed to identify
and characterize proteins and peptides by use of
tandem mass spectrometry data. In addition, a data
analysis method for identification of disulfide bonds
in proteins and peptides by tandem mass spectrometry
data has been developed and incorporated in
MassMatrix. By this new approach, proteins and
peptides with disulfide bonds can be directly
identified in tandem mass spectrometry with high
confidence without any chemical reduction and/or
other derivatization.
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