Synthetic Biology, Part B (eBook, PDF)

Computer Aided Design and DNA Assembly
Redaktion: Voigt, Chris

• Format: PDF

Produktbeschreibung

Synthetic biology encompasses a variety of different approaches, methodologies and disciplines, and many different definitions exist. This Volume of Methods in Enzymology has been split into 2 Parts and covers topics such as Measuring and Engineering Central Dogma Processes, Mathematical and Computational Methods and Next-Generation DNA Assembly and Manipulation.

• Encompasses a variety of different approaches, methodologies and disciplines
• Split into 2 parts and covers topics such as measuring and engineering central dogma processes, mathematical and computational methods and next-generation DNA assembly and manipulation

---

Dieser Download kann aus rechtlichen Gründen nur mit Rechnungsadresse in A, B, BG, CY, CZ, D, DK, EW, E, FIN, F, GR, HR, H, IRL, I, LT, L, LR, M, NL, PL, P, R, S, SLO, SK ausgeliefert werden.

Produktdetails

• Verlag: Elsevier Science & Techn.
• Seitenzahl: 550
• Erscheinungstermin: 15. Juli 2011
• Englisch
• ISBN-13: 9780123851215
• Artikelnr.: 38015023

Inhaltsangabe

Voigt / MIE Vol

Table of Contents

Synthetic biology, Part B

Subtitle: Computer Aided Design and DNA Assembly

Section I. Mathematical and Computational Methods

1. DNA-binding specificity prediction with FoldX


Alejandro D. Nadra, Luis Serrano, Andreu Alibés


2. The Ribosome Binding Site Calculator


Howard M. Salis


3. Designing Genes for Successful Protein Expression


Mark Welch, Alan Villalobos, Claes Gustafsson and Jeremy Minshull


4. Application of Metabolic Flux Analysis in Metabolic Engineering


Sang Yup Lee, Jong Myoung Park and Tae Yong Kim

Section II. Grammars, Languages, and Computer-Aided Design


5. Clotho: A Software Platform for the Creation of Synthetic Biological Systems


Swapnil Bhatia, Bing Xia, Ben Bubenheim, Maisam Dadgar, Douglas Densmore and J. Christopher Anderson


6. SynBioSS-Aided Design of Synthetic Biological Constructs


Yiannis N. Kaznessis


7. The Eugene Language for Synthetic Biology


Lesia Bilitchenko, Adam Liu, Douglas Densmore


8. A step by step introduction to rule-based design of synthetic genetic constructs using GenoCAD


Mandy L. Wilson, Russell Hertzberg, Laura Adam, Jean Peccoud


9. Methods for open innovation on a genome-design platform associating scientific, commercial, and educational communities in synthetic biology


Tetsuro Toyoda

Section III. Next-Generation DNA Assembly and Manipulation


10. Recursive construction and error correction of DNA molecules and libraries from synthetic and natural DNA


Tuval Ben Yehezkel and Ehud Shapiro


11. Industrial scale gene synthesis


Frank Notka, Michael Liss & Ralf Wagner


12. Chemical DNA Synthesis: Methods and Applications


Randall A. Hughes, Aleksandr E. Miklos, and Andrew D. Ellington


13. Assembly of BioBrick standard biological parts using three antibiotic assembly


Reshma Shetty, Meagan Lizarazo, Randy Rettberg, and Thomas F. Knight, Jr


14. Genetic Assembly Tools for Synthetic Biology


Billyana Tsvetanova, Lansha Peng, Xiquan Liang, Ke Li, Jian-Ping Yang, Tony Ho, Josh Shirley, Liewei Xu, Jason Potter, Wieslaw Kudlicki, Todd Peterson, and Federico Katzen


15. Enzymatic assembly of overlapping DNA fragments


Daniel G. Gibson


16. Automated assembly of standard biological parts


Mariana Leguia, Jennifer Brophy, Douglas Densmore and J. Christopher Anderson


17. MEGAWHOP Cloning: A method of creating random mutagenesis libraries via megaprimer PCR of whole plasmids


Kentaro Miyazaki

Section III. Genome-scale Engineering


18. Rapid and Multiplexed Genome Engineering and Genotyping Methods: Applications for Synthetic Biology and Protein and Pathway Engineering


Harris H. Wang and George M. Church


19. Construction and manipulation of giant DNA by a genome vector


Mitsuhiro ITAYA and Kenji TSUGE


20. Mapping E. coli RNA Polymerase and associated transcription factors and identifying promoters genome-wide

Sarah E. Davis, Rachel A. Mooney, Elenita I. Kanin, Jeff Grass, Robert Landick and Aseem Z. Ansari