Patterns and algorithms in high-throughput sequencing count data
Alessandro Mammana
Broschiertes Buch

Patterns and algorithms in high-throughput sequencing count data

Computational and biological challenges

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Proteins interacting with the genome, such as histones and transcription factors, play a major role in the regulation of gene expression. Experimental techniques such as ChIP-seq provide a new type of digital sequences that quantify the presence of a protein along the genome. These are count signals: sequences as long as the genetic code, but with the natural numbers as an alphabet. The computational analysis of these sequences is challenging, as the biological patterns are complex and the datasets are large. This thesis presents 3 efficient algorithms for pattern detection problems in count s...