Direct Suffix Sorting
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Direct Suffix Sorting

Basics, Concepts and Applications

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Pattern matching plays a central role in differentaspects of biological sequence analysis, and has beenused in applications as diverse as short-gunsequencing, multiple sequence alignments, genefinding, analysis of repetition structures, searchingfor unique oligonucleotides, prediction of proteinfunction and structure, sequence homology search,finding DNA-binding protein motifs, etc. Suffix treesand suffix arrays are primary data structures used inrapid pattern matching. And the problem of suffixsorting is a fundamental problem in constructingsuffix arrays. This book presents the basics,concept...