Analytical Comparison of USEARCH and DNACLUST
Raazia Shafqat
Broschiertes Buch

Analytical Comparison of USEARCH and DNACLUST

Heuristic Algorithms to cluster short reads of DNA Sequences

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Over the past several years, new DNA sequencing technologies have led to a great increase in the quantity of biological sequence data that can be generated. Typically there may be millions or even billions of short reads sequences of a few hundred base pairs that are to some degree redundant: the data fall naturally into clusters of sequences that are highly similar to each other. In order to reduce the time required for analysis of the data, it therefore becomes of interest to compute representatives of these clusters, based on some definition of similarity. The book examines two clustering s...